Applications
From WikIBEST
IBEST maintains dozens of software packages on various servers. This page serves as a quick list by category of the packages available.
Contents |
[edit] IBEST Applications - home brew!
- MiCA Microbial Community Analysis
- HiTSA High Throughput Sequence Analysis
- Statgen Genetic Distances Statistical Generator
[edit] Sequence Analysis
[edit] Phylogenetic Inference
- FastDNAml - Solaris, Clusters
- GeneTree - Solaris, Clusters
- Mesquite - Solaris
- ModelTest - Solaris
- MrBayes - Solaris, Clusters
- P4 - Solaris
- PAML - Solaris, Clusters
- PAUP - Solaris, Clusters
- Seq-Gen - Solaris, Clusters
- Phylip - Solaris, Clusters
- TreeView - Solaris, Clusters
[edit] Population Genetics
- GeneConv - Solaris
- Fluctuate - Solaris, Clusters
- Lamarc - Solaris, Clusters
- Migrate - Solaris, Clusters
- Recombine - Solaris
- Structure - Solaris
[edit] Sequence Alignment
- AlignX - Windows
- ClustalW - Solaris, Clusters
- ClustalX - Solaris, Clusters
- HMMER - Solaris, Clusters
- Mummer - Solaris, Clusters
[edit] Protein Structure
- Xplor - Clusters
- 3D Molecular Viewer - Windows
- Amber7 - Solaris, Clusters
- Charmm - Solaris, Clusters
- Cn3d - Windows
[edit] Statistical/Mathematical Packages
- Gromacs - Clusters
- Mathematica - Solaris
- MatLab - Solaris
- R - All
- S3 (Stochastic Spatial Simulator) - Solaris, Clusters
